Package: PINSPlus 2.0.7

PINSPlus: Clustering Algorithm for Data Integration and Disease Subtyping

Provides a robust approach for omics data integration and disease subtyping. PINSPlus is fast and supports the analysis of large datasets with hundreds of thousands of samples and features. The software automatically determines the optimal number of clusters and then partitions the samples in a way such that the results are robust against noise and data perturbation (Nguyen et al. (2019) <doi:10.1093/bioinformatics/bty1049>, Nguyen et al. (2017)<doi:10.1101/gr.215129.116>, Nguyen et al. (2021)<doi:10.3389/fonc.2021.725133>).

Authors:Hung Nguyen, Bang Tran, Duc Tran and Tin Nguyen

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PINSPlus.pdf |PINSPlus.html✨
PINSPlus/json (API)

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2 exports 1.31 score 16 dependencies 1 dependents 3 mentions 28 scripts 504 downloads

Last updated 5 months agofrom:2b48b77780. Checks:OK: 7 NOTE: 2. Indexed: yes.

Exports:PerturbationClusteringSubtypingOmicsData

Dependencies:clustercodetoolsdoParallelentropyFNNforeachimputeirlbaiteratorslatticeMatrixmatrixStatsmclustRcppRcppArmadilloRcppParallel