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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "PINSPlus" in publications use:'
type: software
license: LGPL-2.0-only
title: 'PINSPlus: Clustering Algorithm for Data Integration and Disease Subtyping'
version: 2.0.7
identifiers:
- type: doi
  value: 10.32614/CRAN.package.PINSPlus
abstract: 'Provides a robust approach for omics data integration and disease subtyping.
  PINSPlus is fast and supports the analysis of large datasets with hundreds of thousands
  of samples and features. The software automatically determines the optimal number
  of clusters and then partitions the samples in a way such that the results are robust
  against noise and data perturbation (Nguyen et al. (2019) <DOI: 10.1093/bioinformatics/bty1049>,
  Nguyen et al. (2017)<DOI: 10.1101/gr.215129.116>, Nguyen et al. (2021)<DOI: 10.3389/fonc.2021.725133>).'
authors:
- family-names: Pham
  given-names: Van-Dung
  email: dvp0001@auburn.edu
- family-names: Nguyen
  given-names: Hung
- family-names: Tran
  given-names: Bang
- family-names: Tran
  given-names: Duc
- family-names: Nguyen
  given-names: Tin
preferred-citation:
  type: article
  title: A novel approach for data integration and disease subtyping
  authors:
  - family-names: Nguyen
    given-names: Tin
  - family-names: Tagett
    given-names: Rebecca
  - family-names: Diaz
    given-names: Diana
  - family-names: Draghici
    given-names: Sorin
  journal: Genome Research
  year: '2017'
  date-published: '2017-10-24'
  month: '10'
repository: https://csieuluoi.r-universe.dev
commit: 2b48b77780ee822006dd40b59c10cda188c18ee8
date-released: '2024-04-04'
contact:
- family-names: Pham
  given-names: Van-Dung
  email: dvp0001@auburn.edu
references:
- type: article
  title: 'PINSPlus: A tool for tumor subtype discovery in integrated genomic data'
  authors:
  - family-names: Nguyen
    given-names: Hung
  - family-names: Shrestha
    given-names: Sangam
  - family-names: Draghici
    given-names: Sorin
  - family-names: Nguyen
    given-names: Tin
  journal: Bioinformatics
  year: '2018'
  date-published: '2018-12-24'
  month: '12'
- type: article
  title: 'SMRT: Randomized Data Transformation for Cancer Subtyping and Big Data Analysis'
  authors:
  - family-names: Nguyen
    given-names: Hung
  - family-names: Tran
    given-names: Duc
  - family-names: Tran
    given-names: Bang
  - family-names: Roy
    given-names: Monikrishna
  - family-names: Cassell
    given-names: Adam
  - family-names: Dascalu
    given-names: Sergiu
  - family-names: Draghici
    given-names: Sorin
  - family-names: Nguyen
    given-names: Tin
  journal: Frontiers in oncology
  year: '2021'
  date-published: '2021-10-20'
  month: '10'